PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG472900.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 226aa    MW: 23651.5 Da    PI: 7.1966
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG472900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.43.4e-10141182955
                          HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           ++RR+ri +++ +L+el+P+      +K++ +++LekA+ Y+k Lq
  Pavir.1KG472900.1.p 141 AKNRRERISERLRTLQELVPNG-----TKVDLVTMLEKAISYVKFLQ 182
                          69******************97.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.02E-14130190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-12131189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.60E-13131186No hitNo description
PROSITE profilePS5088815.294132181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.1E-12138187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-7141182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MNAWASTGSA SVLAFDRAMG AAPAAVGEEE EECDAWIDAM DQSDGAAAAP EARHAPAASV  60
GFDAATGCFT LTERASSSGG AGRPFGLLFP STSPSSASLE RAAPARASQK RTYVDAVPQA  120
VSAKRPCGSG RKTKDPQSLA AKNRRERISE RLRTLQELVP NGTKVDLVTM LEKAISYVKF  180
LQLQVKVLGT DEFWPAQGGK APEISQVREA LDAILSSASQ RGQLN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1096624e-94AK109662.1 Oryza sativa Japonica Group cDNA clone:002-143-H06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953650.11e-115PREDICTED: putative transcription factor bHLH086
SwissprotQ9C7071e-50BH083_ARATH; Transcription factor bHLH83
TrEMBLC5Y0851e-105C5Y085_SORBI; Putative uncharacterized protein Sb04g030230
STRINGSb04g030230.11e-104(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141238117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.11e-51ROOT HAIR DEFECTIVE6